Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
3S88 Chain:I ((66-108))
-----------------------------------------------------------SATKRWGFRSGV--
General information:
TITO was launched using:
RESULT:
Template:
3S88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -352 for 28 contacts (-12.6/contact) +
2D Compatibility (PS) -1143 + (NN) 1138 + (LL) 4700
1D Compatibility (HY) 0 + (ID) 250
Total energy: 4093.0 ( 146.18 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3S88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S88-query.scw
PDB file :
Tito_Scwrl_3S88.pdb
: