Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVLNNLQKKFTNSKMV-LNNVNAKFRSGSINCIVGVNGAGKTTLLNIISSILMPTKGDVYLNSESIFENSTL-----KKEIFYTPVNPFFYENLSAKDNLYLICSLYNRKIDQITIEKTIKDVG--LNIED-LNIPVYNFSSGMKQKLNFASMLLVDSNVLLLDEPFNALDHVAQKNFTRILKGLVSKEKI-IIFTSHLPNTILELSENIYLLKDGCFTDKRKAQSFNQTTLETWLLESQKEVIPYEEK
1OXU Chain:A ((4-228))
-IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF--PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL----------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147388 for 1691 contacts (-87.2/contact) +
2D Compatibility (PS) -22602 + (NN) -4790 + (LL) 2436
1D Compatibility (HY) -16400 + (ID) 3250
Total energy: -191994.0 ( -113.54 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1OXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXU-query.scw
PDB file :
Tito_Scwrl_1OXU.pdb
: