Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNDLLVMSVVYILTSVIMFYINGLSKQFFTYVVGFPIIYFGYICLVNLIKKRSRNN
1MZW Chain:B ((114-122))
----------------------------------LGEPITLFG---------------
General information:
TITO was launched using:
RESULT:
Template:
1MZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -292 for 17 contacts (-17.2/contact) +
2D Compatibility (PS) -917 + (NN) -27 + (LL) 4656
1D Compatibility (HY) -800 + (ID) 250
Total energy: 2370.0 ( 139.41 by residue)
QMean score : -0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1MZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MZW-query.scw
PDB file :
Tito_Scwrl_1MZW.pdb
: