Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVLYITAHPFNELVSNSMAAGKAFIETYQQQHPDDEVKHIDLF--ETYIPVIDKDVLTGWGKMSNG---ETLTDDEQMKVSRLSDILEEFLSADKYVFVTPMWNLSFPPVVKAYIDAISIAGKTFKYSAEGPQGLLTDKKVLHIQSRGGYYTEGPAADFEMGDRYLRTIMTFLGVPSYETIIIEGHNAEPHKTEEIKATSINNAEKLATTF
2HPV Chain:A ((2-208))
-SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFY-EG--KDF--ASQYIKAILNFIGVDQVDGLFIEGIDHFPDRAEELLNTAMTKATEYGKTF
General information:
TITO was launched using:
RESULT:
Template:
2HPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88004 for 1555 contacts (-56.6/contact) +
2D Compatibility (PS) -21929 + (NN) -8008 + (LL) 576
1D Compatibility (HY) -20000 + (ID) 4350
Total energy: -141715.0 ( -91.14 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2HPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HPV-query.scw
PDB file :
Tito_Scwrl_2HPV.pdb
: