Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNRLKELRARDGLNQTQLAKLAGVSRQTISLIERNNFMPSVLTAIKIARIFNETVETVFIIEEDEA
2LYK Chain:A ((4-61))
--NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF-------
General information:
TITO was launched using:
RESULT:
Template:
2LYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23399 for 427 contacts (-54.8/contact) +
2D Compatibility (PS) -6557 + (NN) -3353 + (LL) 1096
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: -39113.0 ( -91.60 by residue)
QMean score : 0.769
(partial model without unconserved sides chains):
PDB file :
Tito_2LYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYK-query.scw
PDB file :
Tito_Scwrl_2LYK.pdb
: