Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAITKINDCFELLSMVTYADK-LKSLIKKEFSISFEEFAVL-TYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
3BDD Chain:A ((7-117))
----------DLLYRLKVADETISNLFEKQLGISLTRYSILQTLLKDAPLHQLALQE---RLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSMNQI--
General information:
TITO was launched using:
RESULT:
Template:
3BDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11584 for 676 contacts (-17.1/contact) +
2D Compatibility (PS) -11732 + (NN) -6177 + (LL) 1516
1D Compatibility (HY) -10000 + (ID) 1400
Total energy: -39377.0 ( -58.25 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3BDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BDD-query.scw
PDB file :
Tito_Scwrl_3BDD.pdb
: