Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLVPLLLALLLLVAACGTGGKQSSDKSNGKLKVVTTNSILYDMAKNVGGDNVDIHSIVPVGQDPHEYEVKPKDIKKLTDADVILYNGLNLETGNGWFEKALEQAGKSLKDKKVIAVSKDVKPIYLNGEEGNKDKQDPHAWLSLDNGIKYVKTIQQTFIDNDKKHKADYEKQGNKYIAQLEKLNNDSKDKFNDIPKEQRAMITSEGAFKYFSKQYGITPGYIWEINTEKQGTPEQMRQAIEFVKKHKLKHLLVETSVDKKAMESLSEETKKDIFGEVYTDSIGKEGTKGDSYYKMMKSNIETVHGSMK |
4OXR Chain:A ((8-285)) | -------------------------------KLKIVTTNSILYDMTKNITGDKAEIHSIVPVGQDPHEYEIKPKDVQALTDADVIIYNGFNLESGNGWFEKALKQANKSIKDDSVIQASKNVKPIYLKQGEKSEHNIDPHAWLSLGNGIEYVKTIKSALENADKTHAKDYDKQGTEYLSKLEKLNKESKDKFNDIPKEKRVMITSEGAFKYFAQQFDVKPGYIWEINTENQGTPEQMKQAVDFVKENHIKNLLLETSVSDKSMKSLGEETGAKIYGTVYTDSIGKKGSDGDSYYKMMESNIKTIHESMQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OXR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -67506 for 2355 contacts (-28.7/contact) +
2D Compatibility (PS) -30492 + (NN) -16465 + (LL) 1848
1D Compatibility (HY) -31200 + (ID) 9550
Total energy: -153365.0 ( -65.12 by residue)
QMean score : 0.567
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