Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLISIIIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLSAAYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETP--------KILDFTKQLAPTTHAVTY-YTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTIT-TKRGKFRINQVIMGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVENDLYDVLPSDFSKKDYKLVVEDGKVHADYPREFINKDYGPPTVEVHQPIIQKANTVAKSMWEEHPLFTIIGGACLVAGLALIVHMIINRLFRKRK |
| 3A3J Chain:A ((19-272)) | ---------------------------------------------------------SGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIGESAW-GRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDD-------PNQY-------SSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTIN------------VDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKG------REVESKKLLQWGFANFETFKTLEAGKEISEQRVYY------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41102 for 1924 contacts (-21.4/contact) +
2D Compatibility (PS) -26354 + (NN) -12332 + (LL) 13268
1D Compatibility (HY) -12800 + (ID) 4000
Total energy: -83320.0 ( -43.31 by residue)
QMean score : 0.418
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