Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTKYFLAVGAVASVLTLGACGNSNSQDQGNKTEQKTKSEDSNVKTDKTKHLTGTFSSKNGETVEGKAEIKNGKLMLTNYKSSKGPDLYVYLTKNGDI---KNGKEIAMVDYDKEKQTFDLKNVDLSKYDEVTIYCKKAHVIFGGAKLK
4JY6 Chain:B ((27-101))
-------------------------------------------------------------------ASINDAYWSWIRQSPGKRPEWVGYVHHSGDTNYNPSLKRRVTFSLDTAKNEVSLKLVDLTAADSATYFCARA----------
General information:
TITO was launched using:
RESULT:
Template:
4JY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18489 for 371 contacts (-49.8/contact) +
2D Compatibility (PS) -7326 + (NN) -811 + (LL) 3292
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -27484.0 ( -74.08 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4JY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JY6-query.scw
PDB file :
Tito_Scwrl_4JY6.pdb
: