Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MINKDIYQALQQLIPNEKIKVDEPLKRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIRGIVISLLSLDHIDVSDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSIIQKEHL----VVLEAAFTLAPGKMTEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREVRIIGEHPKES |
2GQU Chain:A ((11-255)) | ------------------------LKDYTTLGVGGPAELWTVETREELKRA-------TEAPYRVLGNGSNLLVLDEGVPERVIRLAG--EFQTYDLKGWVGAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNAGTRFGEMADALE-AVEVFHDGAFHVYCPEELGFGYRKS-----HLPPGGIVTRVRLKLKERPKEEILRRMAEVDRARKG-QP-KRKSAGCAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQ------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GQU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -105285 for 1939 contacts (-54.3/contact) +
2D Compatibility (PS) -25735 + (NN) -6346 + (LL) 5780
1D Compatibility (HY) -12400 + (ID) 4300
Total energy: -148286.0 ( -76.48 by residue)
QMean score : 0.610
|
|
|