Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILT-------HEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
3V4E Chain:A ((98-186))
-----------------------------------------------------------------------------ITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNP--CKVVRK
General information:
TITO was launched using:
RESULT:
Template:
3V4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60226 for 561 contacts (-107.4/contact) +
2D Compatibility (PS) -8960 + (NN) -2724 + (LL) 7248
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -73762.0 ( -131.48 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3V4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4E-query.scw
PDB file :
Tito_Scwrl_3V4E.pdb
: