Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPS-GFTMGMNNWNIAQMRIFWQYTAIIRKEAL
3TIF Chain:A ((143-190))
----------------------------------------------------------------------------------------------------PNQLSGGQQQRVAIARALANNP---PIILADQPTWALDSKTGEKIMQLLKK------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15127 for 235 contacts (-64.4/contact) +
2D Compatibility (PS) -5143 + (NN) -1596 + (LL) 8676
1D Compatibility (HY) 2800 + (ID) 400
Total energy: -10790.0 ( -45.91 by residue)
QMean score : 0.080
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: