Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
1LQY Chain:A ((1-182))
MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDE-NGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINPADPFQVPDGAIPI
General information:
TITO was launched using:
RESULT:
Template:
1LQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74161 for 1439 contacts (-51.5/contact) +
2D Compatibility (PS) -18950 + (NN) -4670 + (LL) -172
1D Compatibility (HY) -21200 + (ID) 5250
Total energy: -124403.0 ( -86.45 by residue)
QMean score : 0.728
(partial model without unconserved sides chains):
PDB file :
Tito_1LQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQY-query.scw
PDB file :
Tito_Scwrl_1LQY.pdb
: