Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEIVIASNNQGKINDFKVIFPDY--HVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTD--RRAQFVCVISM--SGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGEKNV
2Q16 Chain:A ((22-210))
-QKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVD-SAEETGLTFIENAILKARHAAKVTALPAIADASGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLL----------
General information:
TITO was launched using:
RESULT:
Template:
2Q16.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36247 for 1479 contacts (-24.5/contact) +
2D Compatibility (PS) -19762 + (NN) -8271 + (LL) 1124
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -80456.0 ( -54.40 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_2Q16.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q16-query.scw
PDB file :
Tito_Scwrl_2Q16.pdb
: