Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
2NOJ Chain:B ((54-104))
-------------------------------------------------------------------------------------------------------------KVVDAQKAVELFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLK-----
General information:
TITO was launched using:
RESULT:
Template:
2NOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4717 for 325 contacts (-14.5/contact) +
2D Compatibility (PS) -5521 + (NN) -2681 + (LL) 6316
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -11903.0 ( -36.62 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2NOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NOJ-query.scw
PDB file :
Tito_Scwrl_2NOJ.pdb
: