Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
3NMS Chain:M ((9-84))
--------------------------------------TSNEYQNEKLANELKSLLDELNVNELATGSLNTYYKRTIKISGQKAMYALKSKDFKKMSEAKYQLQKIYNEIDEAL--
General information:
TITO was launched using:
RESULT:
Template:
3NMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26442 for 491 contacts (-53.9/contact) +
2D Compatibility (PS) -8499 + (NN) -5892 + (LL) 2736
1D Compatibility (HY) -6400 + (ID) 1850
Total energy: -46347.0 ( -94.39 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_3NMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NMS-query.scw
PDB file :
Tito_Scwrl_3NMS.pdb
: