Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDK-AKYITGQTIHVNGGMYM
4RZH Chain:A ((9-246))
------ALVTGASRGIGKATALALAATGMKVVVNYAQSSTAADAVVAEIIANGGEAIAVQANVANADEVDQLIKTTLDKFSRIDVLVNNAGITRDTLLLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIA-------------PILQFIPLARYGQPEEVAGTIRFLATDPAAAYITGQTFNVDGGMVM
General information:
TITO was launched using:
RESULT:
Template:
4RZH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123094 for 1993 contacts (-61.8/contact) +
2D Compatibility (PS) -24040 + (NN) -965 + (LL) 1312
1D Compatibility (HY) -24800 + (ID) 7050
Total energy: -178637.0 ( -89.63 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4RZH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RZH-query.scw
PDB file :
Tito_Scwrl_4RZH.pdb
: