Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLIDIQNLTIKNTCEKYLIKGIDLKIFSQQINALIGESGAGKSLIAKA--LLEYLPFDLSCTYDSYQFDGENISRLSQY----YGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEALSKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNGNQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPYTERLIKYRTQLKRDYYD
3TUI Chain:C ((44-265))
-------------------LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER------PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF-NLLSSRTVFGN--VALPLELDNTPKDEVKRRVTELLSLVGLGDKH--DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ-----------
General information:
TITO was launched using:
RESULT:
Template:
3TUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125766 for 1716 contacts (-73.3/contact) +
2D Compatibility (PS) -22668 + (NN) -5818 + (LL) 3484
1D Compatibility (HY) -14000 + (ID) 3300
Total energy: -168068.0 ( -97.94 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_3TUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TUI-query.scw
PDB file :
Tito_Scwrl_3TUI.pdb
: