Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKLNMNNEIKKVEQRLEKAIKSKDSVLEQASLHLLSSGGKRVRPAFVILSSQFGKDEQTSEQTYQVAVALELIHMATLVHDDVIDKSDKRRGKLTISKKWDQTTAILTGNFLLALGLEHLMAVKDNRVHQLISESIVDVCRGELFQFQDQFNSQQTIINYLRRINRKTALLIQISTEVGAITSQSDKETVRKLKMIGHYIGMSFQIIDDVLDFTSTEKKLGKPVGSDLLNGHITLPILLEMRKN-PD----FKLKIEQLRRDSERKEFEECIQIIRKSDSIDEAKAVSSKYLSKALNLISELPDGHPKSLLLSLTKKMGSRNT |
3WJO Chain:A ((39-329)) | --------------------LNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVT--IAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMN---------NYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA--------VGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQ---GNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLA-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WJO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95029 for 2211 contacts (-43.0/contact) +
2D Compatibility (PS) -29159 + (NN) -16408 + (LL) 3852
1D Compatibility (HY) -18400 + (ID) 4250
Total energy: -159394.0 ( -72.09 by residue)
QMean score : 0.487
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