Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNQGTAEVP--EELYEDMEDAIDGCPTDSIKIADESFDGDALKFE
3PNI Chain:A ((6-63))
------VDQDTCIGCAICASLCPDVFEMNDEGKA-------QPKVEVIEDEELYNCAKEAMEACPVSAITI-------------
General information:
TITO was launched using:
RESULT:
Template:
3PNI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29058 for 369 contacts (-78.7/contact) +
2D Compatibility (PS) -6079 + (NN) -4306 + (LL) 1808
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -43735.0 ( -118.52 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3PNI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PNI-query.scw
PDB file :
Tito_Scwrl_3PNI.pdb
: