Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDLNVTQATVSRDIKELQLIKV-PIPSGQYVYSLPNDRK-----FHPLEKLGRYLMDSFVNIDGTDNLLVLKTLPGNAQSIGAILDQINWEEVLGTICGDDTCLIICRSKEASDEIKSRIFNLL
3ERE Chain:D ((18-169))
---RAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENL-
General information:
TITO was launched using:
RESULT:
Template:
3ERE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84018 for 1072 contacts (-78.4/contact) +
2D Compatibility (PS) -16106 + (NN) -6751 + (LL) 308
1D Compatibility (HY) -7600 + (ID) 2450
Total energy: -116617.0 ( -108.78 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3ERE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERE-query.scw
PDB file :
Tito_Scwrl_3ERE.pdb
: