Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILTIILIALLVILLFRVGLSILRFLIYVGLVLLCIYLGYQGLIWLLDFFQINSGFLPHFQFNN
4XYJ Chain:A ((73-96))
---------------------AVVRMGIYVGAKVYFIYEGYQGMV--------------------
General information:
TITO was launched using:
RESULT:
Template:
4XYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14073 for 87 contacts (-161.8/contact) +
2D Compatibility (PS) -2760 + (NN) -1317 + (LL) 4248
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -18452.0 ( -212.09 by residue)
QMean score : 0.759
(partial model without unconserved sides chains):
PDB file :
Tito_4XYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XYJ-query.scw
PDB file :
Tito_Scwrl_4XYJ.pdb
: