Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN
1LMZ Chain:A ((1-183))
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYP---
General information:
TITO was launched using:
RESULT:
Template:
1LMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61469 for 1312 contacts (-46.9/contact) +
2D Compatibility (PS) -19334 + (NN) -6912 + (LL) 28
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -108037.0 ( -82.35 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_1LMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMZ-query.scw
PDB file :
Tito_Scwrl_1LMZ.pdb
: