Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
4LDZ Chain:A ((6-193))
--ISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDT--GCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELMEDLYSEANP-------LTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAI----------
General information:
TITO was launched using:
RESULT:
Template:
4LDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78050 for 1452 contacts (-53.8/contact) +
2D Compatibility (PS) -19916 + (NN) -6105 + (LL) 2380
1D Compatibility (HY) -16400 + (ID) 3200
Total energy: -121291.0 ( -83.53 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4LDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDZ-query.scw
PDB file :
Tito_Scwrl_4LDZ.pdb
: