Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
1I4R Chain:A ((1-239))
---------------------------ESQPDPTPDELHKSSEFTGTMGNMKYLYDDHYVSATKVMSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDN-----GGKTCMYGGITKHEGNHFDNGNLQNVLIRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
General information:
TITO was launched using:
RESULT:
Template:
1I4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39657 for 1788 contacts (-22.2/contact) +
2D Compatibility (PS) -26117 + (NN) -18818 + (LL) 3696
1D Compatibility (HY) -30800 + (ID) 11500
Total energy: -123196.0 ( -68.90 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_1I4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I4R-query.scw
PDB file :
Tito_Scwrl_1I4R.pdb
: