Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
2H2G Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDF---------YSQN------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
2H2G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117551 for 1818 contacts (-64.7/contact) +
2D Compatibility (PS) -22870 + (NN) -2658 + (LL) 1072
1D Compatibility (HY) -22400 + (ID) 4600
Total energy: -169007.0 ( -92.96 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_2H2G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2G-query.scw
PDB file :
Tito_Scwrl_2H2G.pdb
: