Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNYTVKIKNSAKSDLRKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYL---------------ERYSRRINHQHRVVYTVDDRNKEVLILSAWSHYD
3C8U Chain:A ((30-116))
--------PGSGKSTLSNPLAAALSAQGLP-AEVVPMDGFHLDNRL--LEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGA-----
General information:
TITO was launched using:
RESULT:
Template:
3C8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7528 for 334 contacts (22.5/contact) +
2D Compatibility (PS) -7845 + (NN) -4401 + (LL) 1484
1D Compatibility (HY) 0 + (ID) 450
Total energy: -3684.0 ( -11.03 by residue)
QMean score : 0.167
(partial model without unconserved sides chains):
PDB file :
Tito_3C8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C8U-query.scw
PDB file :
Tito_Scwrl_3C8U.pdb
: