Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHPRKTLQLPLILKIILNLALIGIVIIVLTHTEFQLNAGDSNVFLLNWDIRGLTSYIFSFLILVALVSKLILIFITRRQRTS
2LOT Chain:A ((31-55))
-----------------------------------------------------IPAIYMLVFLLGTTGNGLVLWTVFR----
General information:
TITO was launched using:
RESULT:
Template:
2LOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10211 for 97 contacts (-105.3/contact) +
2D Compatibility (PS) -2381 + (NN) 1970 + (LL) 5100
1D Compatibility (HY) -2400 + (ID) 150
Total energy: -8072.0 ( -83.22 by residue)
QMean score : -0.325
(partial model without unconserved sides chains):
PDB file :
Tito_2LOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LOT-query.scw
PDB file :
Tito_Scwrl_2LOT.pdb
: