Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGP-----IPPNPS-ELITSRAFANLYDTL--LMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
1HYQ Chain:A ((2-172))
----------------------------------------VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGM---EGLPVTLQN-------VLAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRI-----------------
General information:
TITO was launched using:
RESULT:
Template:
1HYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70277 for 1320 contacts (-53.2/contact) +
2D Compatibility (PS) -18204 + (NN) -14608 + (LL) 2484
1D Compatibility (HY) -8800 + (ID) 2650
Total energy: -112055.0 ( -84.89 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1HYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYQ-query.scw
PDB file :
Tito_Scwrl_1HYQ.pdb
: