Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
1SAX Chain:A ((3-121))
--NKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILN-----
General information:
TITO was launched using:
RESULT:
Template:
1SAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49040 for 722 contacts (-67.9/contact) +
2D Compatibility (PS) -12840 + (NN) -5727 + (LL) 488
1D Compatibility (HY) -13200 + (ID) 3650
Total energy: -83969.0 ( -116.30 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1SAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SAX-query.scw
PDB file :
Tito_Scwrl_1SAX.pdb
: