Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKTLLLSLSASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTNFNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAYNVQCGPGNSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAYQTIQQALKQDSGFPVLDSAGKQVTITITTQTNGANKSETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNHNQGQNGGAPWGLDTAGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNQQNNQNAPQDFNPYTSADRAFAQNMLNHAQAQAKILELADQMKKDLNTIPSQFITNYLAACHNGGGTLPDAGVTNNTWGAGCAYVEETITALNNSLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQVGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTINTNYY-SLLG----TQLQYRRLYSVYLNYVFAY |
| 2F1V Chain:A ((35-191)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNTQLGLTFTY--MAT--DNIGVELLAATPF-RHKIGTRATGDIATVHHLPPTLMAQWYFGDA------SSKFRPYVGAGINYTTFFDNGFNDHG-KEAGLSDLSLKDSWGAAGQVGVDYLIN----------RDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRL-DPWVFMFSAGYRF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -43832 for 1075 contacts (-40.8/contact) +
2D Compatibility (PS) -16294 + (NN) -1757 + (LL) 26200
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -40933.0 ( -38.08 by residue)
QMean score : 0.005
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