Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKTKTKCYRA
2JVD Chain:A ((8-24))
--------ARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKLE--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2015 for 61 contacts (33.0/contact) +
2D Compatibility (PS) -1726 + (NN) 647 + (LL) 5096
1D Compatibility (HY) -400 + (ID) 150
Total energy: 5482.0 ( 89.87 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_2JVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVD-query.scw
PDB file :
Tito_Scwrl_2JVD.pdb
: