Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFSQLGGLSGLLDGVKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
2XDO Chain:A ((269-302))
-----------VVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIE
General information:
TITO was launched using:
RESULT:
Template:
2XDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2122 for 136 contacts (15.6/contact) +
2D Compatibility (PS) -3244 + (NN) 726 + (LL) 164
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -3282.0 ( -24.13 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_2XDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XDO-query.scw
PDB file :
Tito_Scwrl_2XDO.pdb
: