Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFIGLYLLQSAPSEYVYTLRDLDKDAL--------IRPMASIGANQATEARLLVGQKG-----YDRYAQIS---QKTQKNGVISNICYQMLGLGV------GGN---GF-IETKFIKRFLNQQEPY----YGDIGVRLEERHKRL-----VVAQFDPF----FPKNPFLK-----NDEILAINDYKIHSLAEFEWVVSNLSYQSLAKVKIKRNHQIKEVTLKVNKRYGGFLLKDTFL------ERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNHKSVSFNPKALREAL-STPKIELLVWRQGFEFYIKVR |
| 3OTP Chain:A ((124-439)) | -------------------------------------------------------------DAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQS----------FNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK-NIAELRKVLDSKPSVLALNIQRGDSTIYLLM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OTP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53092 for 1737 contacts (-30.6/contact) +
2D Compatibility (PS) -26743 + (NN) -1706 + (LL) 5420
1D Compatibility (HY) -7600 + (ID) 3350
Total energy: -87071.0 ( -50.13 by residue)
QMean score : 0.344
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