Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2L2T Chain:A ((53-70))
------IAAGVIGGLFILVIVGLT--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12278 for 65 contacts (-188.9/contact) +
2D Compatibility (PS) -1736 + (NN) -877 + (LL) 3604
1D Compatibility (HY) -2800 + (ID) 150
Total energy: -14237.0 ( -219.03 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_2L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L2T-query.scw
PDB file :
Tito_Scwrl_2L2T.pdb
: