Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEMELKLIKIDTSHYFEKKPGLGERMDYAGRCYYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKGHTELGEGERLIKTLSMKLAQGLPKEWRVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL
1X8D Chain:A ((21-59))
---------------------------------------------------------------------------------RHNPIWPELEAVLKSHGAHNYAIYLDKARNLLFAMVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSELQEVFYLP---------------
General information:
TITO was launched using:
RESULT:
Template:
1X8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11702 for 171 contacts (-68.4/contact) +
2D Compatibility (PS) -4556 + (NN) -4610 + (LL) 7244
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -15974.0 ( -93.42 by residue)
QMean score : 0.162
(partial model without unconserved sides chains):
PDB file :
Tito_1X8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X8D-query.scw
PDB file :
Tito_Scwrl_1X8D.pdb
: