Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKIAMA-NFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAF-----LHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSE---QLENID-LNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQ--------KTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL |
| 1YYA Chain:A ((1-248)) | MRRVLVAGNWKMHKTPSEARVWFAELKRLLPPLQSE-AAVLPAFP-ILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKG-EAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YYA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135671 for 1942 contacts (-69.9/contact) +
2D Compatibility (PS) -24300 + (NN) -7229 + (LL) 60
1D Compatibility (HY) -13600 + (ID) 4150
Total energy: -184890.0 ( -95.21 by residue)
QMean score : 0.544
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