Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA--NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLE--ATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRD-----FDAKR---QTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQS-ESMGIDTKEDLQNALKIFSPNLLKR
1VIC Chain:A ((5-254))
-VIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYR-AGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANGS--
General information:
TITO was launched using:
RESULT:
Template:
1VIC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127506 for 1833 contacts (-69.6/contact) +
2D Compatibility (PS) -25984 + (NN) -12702 + (LL) 480
1D Compatibility (HY) -14400 + (ID) 4400
Total energy: -184512.0 ( -100.66 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1VIC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIC-query.scw
PDB file :
Tito_Scwrl_1VIC.pdb
: