Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLEL---LALLETFIEKEDLEERFESFAKALRMDEELQQKIESRKTDIVIQSMANILSGNE
4DE9 Chain:A ((82-167))
-----------GHGYDKFTHAHAYGGVDLTVKTVEEMLDIPVDYVVESNFTAFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEE
General information:
TITO was launched using:
RESULT:
Template:
4DE9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 15887 for 416 contacts (38.2/contact) +
2D Compatibility (PS) -9160 + (NN) -3892 + (LL) 1120
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -995.0 ( -2.39 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_4DE9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DE9-query.scw
PDB file :
Tito_Scwrl_4DE9.pdb
: