Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLVSLIVALVFCCFLGAVELPGVYQTQEFLYMKSSFVEFFEHNGKFYAYGISDVDGSKAKKDKLNPNPKLRNRSDKGVVFLSDLIKVGEQSYKGGKAYNFYDGKTYHVRVTQNSNGDLEFTSSYDKWGYVGKTFTWKRLSDEEIKNLKLKRFNLDEVLKTLKDSPI |
4D6J Chain:A ((560-579)) | -----------------------------------------------------------------------------------------------------FDQKNHMVTITINSNGNLEFELHFLEH--------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4D6J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1140 for 54 contacts (-21.1/contact) +
2D Compatibility (PS) -2255 + (NN) -1522 + (LL) 8780
1D Compatibility (HY) -1600 + (ID) 550
Total energy: 1713.0 ( 31.72 by residue)
QMean score : 0.133
|
|
|