Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFRKLATSVSLISLLISNALYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDNKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKNKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRNAKFVLKINDKIPYAQATFLRVPKRSDPNAHTLDKG---------ASIDESKLFEQQKKMYFNYANDVICRPNDEVCSPLRDEMVAMPTNDSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLI--EELIANSQLIANEEEREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLVDKETTIKRSYKGTLISENSYSKKTPINLEDLRSLEEEIKSYYVKSNGLCYANGINLYVKIKNDPYKEGMLCGYESVQKLLSPLRDKLKYDKQKLQKALLKDLK |
| 2YCU Chain:A ((729-935)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQAS-----LESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQ-TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK---RQKKIAVL---LQKYN----------------------RILKKLENW--------ATTKSVYLGSNETGDSIT-AVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYK------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 85315 for 1065 contacts (80.1/contact) +
2D Compatibility (PS) -20494 + (NN) -4238 + (LL) 16180
1D Compatibility (HY) -4000 + (ID) 2700
Total energy: 70063.0 ( 65.79 by residue)
QMean score : 0.179
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