Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLDQLEVSHDADSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG
3D53 Chain:A ((3-170))
-FIKKIKAKANNNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGIDR---
General information:
TITO was launched using:
RESULT:
Template:
3D53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65270 for 1270 contacts (-51.4/contact) +
2D Compatibility (PS) -17761 + (NN) -4261 + (LL) 508
1D Compatibility (HY) -16800 + (ID) 4050
Total energy: -107634.0 ( -84.75 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_3D53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D53-query.scw
PDB file :
Tito_Scwrl_3D53.pdb
: