Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLETPKVLLKNLQDCKIHFIGIGGIGISGLAKYLKAQGAKISGSDIAISPSVKYLKALGVEINIPHDPKAINHQDVIIHSAIIKEDNTEIQRAKELEIPILSRKDALYSILK--DKRVFSVCGAHGKSSITAMLSAICPAF----GAIIGAHSKEFDSNVRESADMSLVFEADESDSSFLFSNPFCAIVPNTEPEHLEHYDHDLERFFFAYKYFLDHAQKRVIYKEDPFLKNYSKDAIVLEKKDIYNIQ-----------YILKDGEPYTSFELKNLGAFLVWGLGEHNATNASLAILSALDEL--NLEEIRNNLLNFKGIKKRFDIL---QKNNLILIDDYAHHPTEIGATLKSAR-IYANLLNTQEKIIVIWQAHKYSRLMDNLEEFKKCFLEHCDRLIILPVYSASEVKRDIDLKAHFKHYNPTFIDRVRKKGDFLELLVN-DNVVETIEKGFVIGFGAGDITYQLRGEM |
| 1J6U Chain:A ((5-436)) | ------------------FVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGNGPVVYELDESEEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFAEDE-LTSHLGDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGF--------HNVLNA-LAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFEN-----EKIVVIFQPHR--------GNFAKA-LQLADEVVVTEVYD--------SGKMIWDS-----LKSLGKEAYFVEKLPELEKVISVSENTVFLFVGAGDIIYSSRRFV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1J6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 50401 for 3209 contacts (15.7/contact) +
2D Compatibility (PS) -38992 + (NN) 5734 + (LL) 4180
1D Compatibility (HY) 16000 + (ID) 1650
Total energy: 35673.0 ( 11.12 by residue)
QMean score : 0.051
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