Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESL----GLEVDTTI---VDKGYEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALP------TFICNDVMKNPQVEQYLNSLTVHLRQAFGK
3EYW Chain:A ((251-404))
------------------------SHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWA----------------YGHGGTALHGKHLL---WAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAH---
General information:
TITO was launched using:
RESULT:
Template:
3EYW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49517 for 887 contacts (-55.8/contact) +
2D Compatibility (PS) -15088 + (NN) -1425 + (LL) 2004
1D Compatibility (HY) -5600 + (ID) 2300
Total energy: -71926.0 ( -81.09 by residue)
QMean score : 0.257
(partial model without unconserved sides chains):
PDB file :
Tito_3EYW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EYW-query.scw
PDB file :
Tito_Scwrl_3EYW.pdb
: