Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4D2E Chain:A ((15-121))
-----------GFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWAILLWSHFG-
General information:
TITO was launched using:
RESULT:
Template:
4D2E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51532 for 595 contacts (-86.6/contact) +
2D Compatibility (PS) -11527 + (NN) -7736 + (LL) 312
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -83233.0 ( -139.89 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_4D2E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D2E-query.scw
PDB file :
Tito_Scwrl_4D2E.pdb
: