Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFFGNISVGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
1WM9 Chain:A ((38-216))
LQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRGYRQRLEEVVGGAVFPAEGSEMVVVKGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMMMRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLR-
General information:
TITO was launched using:
RESULT:
Template:
1WM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100888 for 1350 contacts (-74.7/contact) +
2D Compatibility (PS) -19015 + (NN) -3539 + (LL) -28
1D Compatibility (HY) -19200 + (ID) 4150
Total energy: -146820.0 ( -108.76 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1WM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WM9-query.scw
PDB file :
Tito_Scwrl_1WM9.pdb
: