Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEIAVFGGGAWGRALAFAFGEK-NEVKI--ISRRDLNEPLKKLNDALISKGSAPIEQV----DLERGLKAA-LYVIAISVQHLREWFQNA-------SLPKNAKVLIASKGIEVLNKAFVSEIAKDFIDPNALCFLAGPSFAAEIIQGLPCALVIHSNNQALALEF----ANKTPSFIRAYAQQDIIGGEIAGAYKNVIAIAGGVCDGLKLGNSAKASLLSRGLVEMQRFGAFFGGKTETFLGLSGAGDLFLTANSILSRNYRVGLGLAQNKPLEVVLEELGEVAEGVKTTNAIVEIARKYGIYTPIASEL-ALLLKGKSVLESMNDLIRRA |
| 1M66 Chain:A ((20-343)) | ----VFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFV-CWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQR---AVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M66.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208316 for 2624 contacts (-79.4/contact) +
2D Compatibility (PS) -32203 + (NN) -4916 + (LL) 868
1D Compatibility (HY) -24800 + (ID) 5300
Total energy: -274667.0 ( -104.67 by residue)
QMean score : 0.507
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