Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQDIELVGIDNSMPMLKKAQEKLKDFNNVRFECMDFLEVKFKEASAFSLLFVLQFVRPM---QREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
4IV8 Chain:A ((72-174))
-----------------------------------------------------------PNSKVLDIGSGLGGGCKYINEKY--DAHVYGVDICEKMIAIAKLRNKDKSKVEFEAMDILKKDFPECT-FDMIYSRDAILHLPYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYINKRKYTLIPIQDYGDLIKSCNFQNVQAKDISDYWLELLQMELNKLEEKKDEFLKLYPTDEYN
General information:
TITO was launched using:
RESULT:
Template:
4IV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90652 for 766 contacts (-118.3/contact) +
2D Compatibility (PS) -10734 + (NN) -4192 + (LL) 4984
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -108844.0 ( -142.09 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4IV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IV8-query.scw
PDB file :
Tito_Scwrl_4IV8.pdb
: