Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKSAIFVLSGFLAFLLYALLLYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEK---KNEKIEKVTE----------KQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDE----QKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQDGVDEKAYQEWYAQIYQILYKGWRGVFYHKASVSVLIMITKDGEFDYTILSYSDFKDYNKSVMTLLDDLKKVDFPPYPGGNMISIKVNFTTKEEQ |
| 1PWU Chain:A ((244-361)) | ----------------------------------------MDKFNEQEINLSLEELKDQRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKK--DDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLIDSPSINLDVRKQYKRDIQNIDALLHQSIGSTLYNKIYLYENMNINNLTATLGADLVDSTDNTKINRGIFNEFKKNFKYSISS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PWU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 49798 for 445 contacts (111.9/contact) +
2D Compatibility (PS) -10768 + (NN) -4062 + (LL) 4288
1D Compatibility (HY) -4800 + (ID) 1600
Total energy: 32856.0 ( 73.83 by residue)
QMean score : 0.378
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