Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEIDNQTPLESDFLLLEKIADVLASTQIIELVLVSDETMREINRDLRDCDYATDVLSFPLEAIPHTPLGSVVINAPLAQENALKLGHSLE---DEIALLFIHGVLHLLGYDHEKDKGEQRQKEGELIKAFDLPLSLIERTQEC
3NI8 Chain:A ((90-157))
--------------------------------------------RDWNECDYSTVTVEFISVKENHTKLKLTHNNIPAS--NKYNEGGVLERCKNGWTQNFLHNIEVILGYPKK------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3NI8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4794 for 296 contacts (-16.2/contact) +
2D Compatibility (PS) -6860 + (NN) 747 + (LL) 6728
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -6829.0 ( -23.07 by residue)
QMean score : 0.096
(partial model without unconserved sides chains):
PDB file :
Tito_3NI8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NI8-query.scw
PDB file :
Tito_Scwrl_3NI8.pdb
: